dakwok/SSNIP
The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from cancer-specific splicing events (neojunctions). The code available in this repository are the neopeptide identifier stages: 1. Neojunction calling, 2. Neopeptide prediction, 3. n-mer presentation prediction
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